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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
35
DNA accessibility
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
6
July, 2019
4
August, 2017
3
March, 2020
1
January, 2018
1
May, 2022
Available data
35
bigWig
34
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
246
pancreas
191
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
45
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
40
hg19
34
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ChIP-seq
whole genome sequencing assay
month_released!
September, 2020
BIOSAMPLE
ASSAY
48 results
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DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
4
1
1
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
1
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