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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
29
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
Transcription
42
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Date released
18
May, 2022
17
November, 2018
12
August, 2017
8
October, 2017
5
January, 2018
1
August, 2018
1
December, 2018
1
March, 2019
Available data
423
bed narrowPeak
293
bam
265
bigWig
189
bigBed narrowPeak
186
bed bed3+
180
bed broadPeak
178
bigBed broadPeak
89
txt
64
xls
63
fastq
37
tsv
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
63
Homo sapiens
Biosample type
primary cell
54
tissue
6
in vitro differentiated cells
2
cell line
1
stem cell
Organ
33
pancreas
8
connective tissue
8
liver
7
adipose tissue
4
spleen
3
brain
2
musculature of body
1
embryo
Project
63
AMP
Genome assembly (visualization)
43
hg19
30
GRCh38
5
hg18
Lab
43
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
assay_slims!
Transcription
assay_title!
ChIP-seq
biosample_type!
primary cell
organ_slims!
esophagus
BIOSAMPLE
ASSAY
63 results
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Clear Filters
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
2
liver
2
1
1
spleen
1
1
2
adipose tissue
3
+ See 7 more…
in vitro differentiated cells
Posterior foregut
1
adipocyte
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
+ See 1 more…
cell line
HepG2
1
1
stem cell
hESC
1
See all biosamples
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