Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
229
ATAC-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
23
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
whole genome sequencing assay
Assay category
Transcription
319
DNA accessibility
59
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
101
May, 2020
101
May, 2022
46
May, 2021
45
February, 2021
24
June, 2019
18
February, 2023
14
September, 2018
13
July, 2019
11
October, 2019
9
August, 2021
8
January, 2021
8
November, 2020
7
August, 2020
7
March, 2020
6
August, 2017
5
September, 2017
4
October, 2022
3
September, 2020
2
November, 2019
1
December, 2018
1
January, 2018
1
March, 2023
1
November, 2018
Available data
128
bam
119
bigWig
101
zippedFastqFolder
81
bed narrowPeak
69
fastq
54
bigBed narrowPeak
35
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
24
tsv
11
bed bedMethyl
11
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
3
cool
2
bed bed3
1
tar
1
txt
1
vcf
Organism
434
Homo sapiens
Biosample type
643
tissue
373
primary cell
63
cell line
58
in vitro differentiated cells
5
stem cell
Organ
181
epithelium
152
pancreas
20
kidney
20
vasculature
17
blood vessel
14
liver
12
connective tissue
12
heart
9
blood
9
bodily fluid
9
brain
8
artery
5
vein
2
eye
2
musculature of body
1
bone element
1
bone marrow
1
mammary gland
Project
259
AMP
147
HPAP
29
T1D
1
ITG
Genome assembly (visualization)
146
hg19
91
GRCh38
Lab
246
AMP-T2D consortium
147
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
7
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
436 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
whole genome sequencing assay
primary cell
pancreatic alpha cell
35
31
1
Langerhans cell
48
pancreatic beta cell
23
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 68 more…
cell line
EndoC_BH1
19
1
6
3
2
2
1
HepG2
1
1
2
2
2
1
smooth muscle cell of the coronary artery
8
HEK293T
2
Panc1
1
1
+ See 8 more…
See all biosamples
Download