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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
Transcription
22
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
February, 2021
9
August, 2021
6
February, 2023
6
March, 2020
6
November, 2020
3
October, 2019
2
November, 2019
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
7
bigWig
6
tsv
4
bam
3
bed narrowPeak
2
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
2
hic
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
51
Homo sapiens
Biosample type
548
tissue
338
primary cell
54
in vitro differentiated cells
53
cell line
5
stem cell
Organ
31
pancreas
30
epithelium
7
liver
5
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
48
AMP
5
T1D
Genome assembly (visualization)
9
hg19
5
GRCh38
Lab
35
AMP-T2D consortium
7
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
ChIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ATAC-seq
MeRIP-seq
STARR-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
EndoC_BH1
19
6
1
3
2
2
1
HepG2
2
1
2
1
1
HEK293T
2
Panc1
1
1
GM12878
1
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