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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
ChIP-seq
1
pCHi-C
Assay category
27
DNA accessibility
4
3D chromatin structure
Transcription
Date released
24
June, 2019
4
July, 2019
2
October, 2019
1
February, 2021
1
November, 2020
Available data
115
bam
102
bigWig
69
bed narrowPeak
52
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
24
fastq
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
32
Homo sapiens
Biosample type
177
tissue
32
primary cell
6
in vitro differentiated cells
3
cell line
Organ
18
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
32
AMP
Genome assembly (visualization)
27
GRCh38
25
hg19
Lab
32
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ChIP-seq
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
32 results
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DNase-seq
Hi-C
pCHi-C
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
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