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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
259
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
163
June, 2019
95
February, 2021
81
February, 2023
73
August, 2021
39
May, 2022
30
July, 2019
29
March, 2020
25
October, 2019
21
November, 2019
19
August, 2017
16
November, 2018
11
May, 2023
10
April, 2020
8
January, 2021
7
October, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
389
bed narrowPeak
262
bam
239
bigWig
184
bigBed narrowPeak
177
bed bed3+
177
bed broadPeak
176
bigBed broadPeak
85
txt
64
xls
53
fastq
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
640
Homo sapiens
Biosample type
642
tissue
373
primary cell
63
cell line
58
in vitro differentiated cells
5
stem cell
Organ
157
kidney
96
bone element
96
pancreas
81
heart
49
limb
47
blood vessel
47
vasculature
46
musculature of body
41
artery
35
brain
35
eye
32
liver
18
ureter
16
adipose tissue
16
connective tissue
13
epithelium
12
skeleton
11
lung
5
spleen
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
610
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
350
GRCh38
307
hg19
Lab
480
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
4
audit script error
assay_slims!
Transcription
assay_title!
ChIP-seq
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
642 results
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ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
75
13
6
1
1
1
islet of Langerhans
67
1
7
4
3
1
1
4
bone element
84
coronary artery
36
2
liver
20
2
3
1
1
1
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