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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 531ATAC-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • Transcription
  • 832DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 187June, 2019
  • 144February, 2021
  • 140May, 2022
  • 111February, 2023
  • 101May, 2020
  • 96August, 2021
  • 52May, 2021
  • 46March, 2020
  • 43July, 2019
  • 42October, 2019
  • 28November, 2019
  • 26August, 2017
  • 17November, 2018
  • 16January, 2021
  • 14September, 2018
  • 12November, 2020
  • 11May, 2023
  • 10April, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5March, 2019
  • 5September, 2017
  • 4October, 2022
  • 3September, 2020
  • 2December, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2023
Available data
  • 492bed narrowPeak
  • 408bam
  • 377bigWig
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 130fastq
  • 101zippedFastqFolder
  • 89txt
  • 64xls
  • 56tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1138Homo sapiens
Biosample type
  • 643tissue
  • 373primary cell
  • 63cell line
  • 58in vitro differentiated cells
  • 5stem cell
Organ
  • 249pancreas
  • 194epithelium
  • 177kidney
  • 97bone element
  • 93heart
  • 67vasculature
  • 64blood vessel
  • 50connective tissue
  • 49artery
  • 49limb
  • 48musculature of body
  • 46liver
  • 44brain
  • 37eye
  • 18ureter
  • 17adipose tissue
  • 12skeleton
  • 11lung
  • 9blood
  • 9bodily fluid
  • 5spleen
  • 5vein
  • 3nerve
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 933AMP
  • 147HPAP
  • 51T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 505hg19
  • 460GRCh38
  • 5hg18
Lab
  • 777AMP-T2D consortium
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 74Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 155inconsistent ontology term
  • 35audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • Transcription
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1142 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
whole genome sequencing assay
tissue
kidney75136111
islet of Langerhans681743141
bone element84
coronary artery362
liver2023111
primary cell
pancreatic alpha cell35311
Langerhans cell48
pancreatic beta cell23161
naive thymus-derived CD4-positive, alpha-beta T cell221
CD4-positive, alpha-beta memory T cell22
cell line
EndoC_BH119162321
HepG2112221
smooth muscle cell of the coronary artery8
HEK293T2
Panc111
in vitro differentiated cells
adipocyte811
neural progenitor cell10
embryonic stem cell61
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes (cardiac muscle cell)122
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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