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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
DNase-seq
12
ATAC-seq
3
Hi-C
2
RRBS
Assay category
74
DNA binding
Transcription
12
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
12
transcription factor
6
RNA binding protein
Date released
47
April, 2019
15
May, 2019
12
February, 2021
6
July, 2019
6
October, 2019
3
June, 2019
2
March, 2020
Available data
86
bed narrowPeak
85
bam
78
bigWig
64
bigBed narrowPeak
4
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
91
Homo sapiens
Biosample type
75
tissue
12
cell line
4
primary cell
Organ
458
liver
246
pancreas
154
epithelium
130
brain
106
connective tissue
97
vasculature
93
blood vessel
91
heart
56
limb
55
blood
55
bodily fluid
45
kidney
35
artery
34
musculature of body
30
eye
25
adipose tissue
25
nerve
15
embryo
15
vein
13
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
91
AMP
Genome assembly (visualization)
166
GRCh38
91
hg19
Lab
91
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
Transcription
assay_title!
DNase-seq
organ_slims!
skin of body
BIOSAMPLE
ASSAY
91 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
tissue
heart left ventricle
29
2
1
1
heart
12
1
heart right ventricle
11
1
right atrium auricular region
7
1
right cardiac atrium
5
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
1
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