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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
9
WGBS
6
RRBS
5
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
257
DNA binding
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
396
November, 2017
278
August, 2017
250
October, 2019
217
May, 2021
151
May, 2020
140
May, 2022
139
August, 2021
138
February, 2021
115
May, 2019
93
December, 2017
80
April, 2019
76
February, 2023
75
November, 2018
74
October, 2018
49
March, 2020
42
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
31
June, 2019
25
January, 2019
24
February, 2018
19
October, 2017
16
January, 2021
14
September, 2018
11
May, 2023
11
November, 2020
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
156
fastq
150
bam
140
bigWig
137
bed narrowPeak
85
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
19
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
271
Homo sapiens
Biosample type
171
tissue
62
in vitro differentiated cells
45
primary cell
Organ
107
connective tissue
76
pancreas
53
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
278
AMP
Genome assembly (visualization)
144
hg19
119
GRCh38
Lab
278
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
DNase-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
artery
BIOSAMPLE
ASSAY
278 results
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Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
FAIRE-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
32
1
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
62
primary cell
skeletal muscle myoblast
15
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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