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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
288
ChIP-seq
50
ATAC-seq
DNase-seq
3
pCHi-C
2
WGBS
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
288
DNA binding
Transcription
51
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
238
histone
238
histone modification
132
narrow histone mark
106
broad histone mark
43
control
7
transcription factor
3
RNA binding protein
Date released
109
October, 2019
82
November, 2017
78
May, 2019
36
February, 2023
16
October, 2017
14
February, 2021
7
July, 2019
4
March, 2020
Available data
282
bam
272
bed narrowPeak
231
bigWig
146
bigBed narrowPeak
124
tagAlign
10
fastq
9
bed broadPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
346
Homo sapiens
Biosample type
332
tissue
primary cell
14
cell line
Organ
585
liver
268
pancreas
217
brain
191
heart
176
connective tissue
130
kidney
129
blood vessel
129
vasculature
96
bone element
88
adipose tissue
79
artery
79
epithelium
79
limb
61
blood
61
bodily fluid
43
musculature of body
36
nerve
34
eye
24
spleen
23
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
346
AMP
Genome assembly (visualization)
275
GRCh38
190
hg19
Lab
346
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
ATAC-seq
pCHi-C
WGBS
FAIRE-seq
Hi-C
RRBS
tissue
coronary artery
5
36
tibial artery
23
1
layer of hippocampus
23
brain
20
1
1
aorta
13
1
2
1
+ See 73 more…
cell line
smooth muscle cell of the coronary artery
6
8
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