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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
17
ATAC-seq
DNase-seq
Assay category
146
DNA binding
Transcription
17
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
53
August, 2017
43
December, 2017
30
August, 2021
24
February, 2018
6
May, 2021
5
November, 2019
2
October, 2019
Available data
163
bam
127
bed narrowPeak
126
bigWig
125
fastq
40
tagAlign
23
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
2
tsv
Organism
163
Homo sapiens
Biosample type
807
tissue
476
cell line
328
primary cell
163
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
163
AMP
Genome assembly (visualization)
137
GRCh38
136
hg19
Lab
163
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
Transcription
assay_title!
DNase-seq
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
53
neural progenitor cell
20
10
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
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