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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
24
ATAC-seq
DNase-seq
1
FAIRE-seq
Assay category
Transcription
80
DNA binding
25
DNA accessibility
Target of assay
93
histone
93
histone modification
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
24
September, 2018
21
August, 2017
17
October, 2019
12
December, 2017
10
November, 2019
5
September, 2017
4
June, 2019
4
May, 2019
4
November, 2017
2
August, 2021
2
May, 2021
Available data
105
bam
90
bigWig
86
bed narrowPeak
82
fastq
80
zippedFastqFolder
44
bigBed narrowPeak
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
3
bed bed3+
3
cool
2
hdf5
1
tar
Organism
105
Homo sapiens
Biosample type
81
primary cell
14
in vitro differentiated cells
10
cell line
Organ
464
liver
207
pancreas
105
epithelium
94
brain
93
connective tissue
90
vasculature
88
blood vessel
87
heart
60
limb
59
blood
59
bodily fluid
41
adipose tissue
38
artery
38
kidney
28
nerve
21
spleen
20
musculature of body
14
embryo
12
vein
8
bone element
8
skeleton
2
eye
Project
105
AMP
Genome assembly (visualization)
78
hg19
73
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
10
missing controlled_by
assay_slims!
Transcription
assay_title!
DNase-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic beta cell
9
7
pancreatic alpha cell
9
6
endothelial cell of umbilical vein
11
1
pancreatic ductal cell
6
4
pancreatic acinar cell
4
5
+ See 7 more…
in vitro differentiated cells
hepatocyte
10
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
9
1
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