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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
3
Hi-C
Assay category
10
DNA accessibility
3
3D chromatin structure
Date released
10
February, 2023
3
October, 2022
Available data
1777
bam
bed narrowPeak
1558
bigWig
975
fastq
833
bigBed narrowPeak
398
tagAlign
116
bed broadPeak
101
zippedFastqFolder
89
txt
79
bigBed broadPeak
67
bed bed3+
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
3
primary cell
Organ
5
connective tissue
4
bone element
4
skeleton
3
epithelium
3
pancreas
1
brain
Project
10
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
assay_slims!
Transcription
assay_title!
DNase-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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