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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
83
ChIP-seq
2
ATAC-seq
Assay category
83
DNA binding
2
DNA accessibility
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
57
November, 2017
24
August, 2017
3
October, 2017
October, 2019
1
March, 2019
Available data
1264
bam
1115
bed narrowPeak
1052
bigWig
865
fastq
642
bigBed narrowPeak
215
tagAlign
101
zippedFastqFolder
89
txt
85
bed broadPeak
64
xls
63
bigBed broadPeak
56
tsv
53
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
81
Homo sapiens
Biosample type
52
cell line
22
tissue
11
primary cell
Organ
52
liver
10
pancreas
8
musculature of body
7
brain
2
epithelium
2
vasculature
1
blood vessel
Project
85
AMP
Genome assembly (visualization)
84
hg19
58
GRCh38
Lab
83
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
assay_slims!
Transcription
assay_title!
DNase-seq
month_released!
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
52
tissue
skeletal muscle tissue
8
islet of Langerhans
4
2
pancreas
4
brain
2
cingulate gyrus
1
+ See 1 more…
primary cell
skeletal muscle myoblast
8
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
See all biosamples
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