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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
Transcription
75
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
55
histone
55
histone modification
32
broad histone mark
23
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
328
November, 2017
236
August, 2017
234
October, 2019
218
June, 2019
144
February, 2021
140
May, 2022
127
May, 2021
120
May, 2019
115
August, 2021
111
February, 2023
101
May, 2020
94
December, 2017
86
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
41
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
2
November, 2020
1
August, 2018
1
August, 2022
1
March, 2023
Available data
133
bed narrowPeak
128
bigWig
104
bam
tagAlign
Organism
127
Homo sapiens
Biosample type
67
primary cell
42
in vitro differentiated cells
17
cell line
1
tissue
Organ
17
epithelium
17
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
109
AMP
18
T1D
Genome assembly (visualization)
52
hg19
14
GRCh38
Lab
92
Kyle Gaulton, UCSD
35
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
assay_slims!
Transcription
assay_title!
FAIRE-seq
MeRIP-seq
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
monocyte
1
13
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
1
16
tissue
thymus
1
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