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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
223
ATAC-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
19
pCHi-C
13
Hi-C
9
RRBS
4
GRO-seq
1
DNAme array
FAIRE-seq
Assay category
Transcription
398
DNA binding
304
DNA accessibility
57
DNA methylation
13
3D chromatin structure
Target of assay
304
histone
304
histone modification
154
broad histone mark
150
narrow histone mark
58
control
36
transcription factor
16
RNA binding protein
2
chromatin remodeller
Date released
198
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
43
December, 2017
38
June, 2019
35
August, 2021
35
October, 2019
33
February, 2021
24
February, 2018
15
February, 2023
11
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
7
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
January, 2018
3
October, 2022
3
September, 2020
1
March, 2023
Available data
445
bam
421
bigWig
364
bed narrowPeak
232
fastq
126
tagAlign
107
bigBed narrowPeak
101
zippedFastqFolder
43
bed broadPeak
43
bigBed broadPeak
39
bed bed3+
20
tsv
10
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
3
bed bedgraph
3
cool
3
hdf5
3
txt
2
ibed
Organism
795
Homo sapiens
Biosample type
1456
tissue
627
primary cell
547
cell line
168
in vitro differentiated cells
7
stem cell
Organ
264
epithelium
194
pancreas
connective tissue
34
vasculature
30
kidney
28
blood vessel
24
liver
23
embryo
21
vein
18
brain
12
musculature of body
9
heart
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
540
AMP
147
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
456
hg19
356
GRCh38
4
hg18
Lab
462
AMP-T2D consortium
182
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
1
ITG
Audit category:
52
inconsistent ontology term
31
audit script error
Audit category:
45
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
FAIRE-seq
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
795 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
DNAme array
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
+ See 65 more…
in vitro differentiated cells
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
+ See 13 more…
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