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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
32
DNase-seq
Hi-C
Assay category
118
DNA binding
32
DNA accessibility
Target of assay
99
histone
99
histone modification
54
narrow histone mark
45
broad histone mark
19
control
Date released
66
November, 2017
38
October, 2019
30
June, 2019
14
October, 2017
2
November, 2018
Available data
231
bam
207
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
150
Homo sapiens
Biosample type
145
tissue
5
primary cell
Organ
150
brain
95
liver
78
kidney
49
musculature of body
48
connective tissue
47
pancreas
36
heart
36
limb
23
epithelium
18
ureter
17
vasculature
15
blood vessel
14
adipose tissue
10
artery
4
eye
3
embryo
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
150
AMP
Genome assembly (visualization)
114
GRCh38
65
hg19
Lab
150
AMP-T2D consortium
Audit category:
4
missing controlled_by
assay_slims!
Transcription
assay_title!
Hi-C
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
DNase-seq
tissue
brain
14
14
caudate nucleus
15
1
substantia nigra
16
layer of hippocampus
15
cingulate gyrus
14
+ See 37 more…
primary cell
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
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