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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
6
Hi-C
1
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
47
DNA accessibility
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
86
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
March, 2020
Available data
130
bam
105
bed narrowPeak
102
bigWig
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
137
Homo sapiens
Biosample type
115
tissue
22
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
137
AMP
Genome assembly (visualization)
109
hg19
104
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
HiChIP
organ_slims!
thymus
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
+ See 9 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
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