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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
31
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
34
DNA accessibility
31
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
34
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
54
bigWig
52
bed narrowPeak
45
bed broadPeak
42
bam
39
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
78
Homo sapiens
Biosample type
74
tissue
4
primary cell
Organ
597
liver
424
pancreas
267
epithelium
260
brain
221
heart
209
kidney
186
connective tissue
168
vasculature
163
blood vessel
114
limb
89
adipose tissue
83
artery
78
musculature of body
69
blood
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
19
embryo
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
Project
78
AMP
Genome assembly (visualization)
59
hg19
39
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
assay_title!
MPRA
audit.ERROR.category!
inconsistent ontology term
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
78 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
12
7
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
2
1
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