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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
271
DNA binding
261
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
229
histone
229
histone modification
121
broad histone mark
108
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
54
August, 2017
46
September, 2018
34
February, 2021
31
June, 2019
30
October, 2019
12
February, 2023
9
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
3
October, 2022
3
September, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2020
Available data
354
bigWig
352
bam
290
bed narrowPeak
156
fastq
108
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
612
Homo sapiens
Biosample type
1339
tissue
612
primary cell
517
cell line
222
in vitro differentiated cells
5
stem cell
Organ
218
epithelium
187
pancreas
27
vasculature
23
blood vessel
20
kidney
20
vein
16
connective tissue
11
musculature of body
10
brain
8
blood
8
bodily fluid
6
heart
4
eye
3
liver
1
bone element
1
bone marrow
Project
356
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
341
hg19
249
GRCh38
Lab
323
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
MPRA
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
612 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
11
35
31
1
pancreatic beta cell
11
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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