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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
snATAC-seq
60
ATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
136
DNA accessibility
47
DNA methylation
44
DNA binding
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
101
May, 2022
61
May, 2021
33
February, 2021
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
101
zippedFastqFolder
54
bigWig
44
bam
44
bed narrowPeak
44
tagAlign
43
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
252
Homo sapiens
Biosample type
216
primary cell
32
tissue
5
cell line
Organ
120
pancreas
99
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
147
HPAP
95
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
55
GRCh38
47
hg19
Lab
147
Klaus Kaestner, Upenn
95
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
MPRA
award.project!
AMP
lab.title!
Bing Ren, UCSD
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
253 results
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snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
monocyte
44
1
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
islet of Langerhans
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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