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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
47
ATAC-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
128
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
21
May, 2019
14
July, 2019
8
February, 2021
6
October, 2019
5
June, 2019
5
March, 2020
Available data
191
bed narrowPeak
154
bigWig
141
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
191
Homo sapiens
Biosample type
177
tissue
8
cell line
6
primary cell
Organ
460
liver
431
pancreas
288
epithelium
191
heart
172
connective tissue
151
kidney
146
vasculature
144
blood vessel
106
brain
97
bone element
80
adipose tissue
79
limb
73
artery
69
blood
69
bodily fluid
39
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
191
AMP
Genome assembly (visualization)
162
GRCh38
87
hg19
Lab
151
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_slims!
Transcription
assay_title!
MeRIP-seq
files.file_type!
bigBed broadPeak
tagAlign
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
4
1
1
1
coronary artery
5
36
left cardiac atrium
40
heart right ventricle
13
2
1
1
heart
14
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
primary cell
cardiac fibroblast
5
1
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