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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ATAC-seq
37
ChIP-seq
2
Hi-C
Assay category
123
DNA accessibility
37
DNA binding
2
3D chromatin structure
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
RNA binding protein
5
transcription factor
Date released
64
August, 2021
35
February, 2023
35
May, 2024
11
May, 2023
7
August, 2020
3
October, 2019
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
1533
bed narrowPeak
bam
1430
bigWig
910
bigBed narrowPeak
632
fastq
275
bed broadPeak
260
bigBed broadPeak
256
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
150
tissue
11
primary cell
1
cell line
Organ
75
kidney
70
heart
35
artery
35
blood vessel
35
vasculature
14
pancreas
10
epithelium
2
brain
Project
151
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
211
hg19
162
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
38
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
RNA microarray
files.file_type!
bam
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
tissue
kidney
75
coronary artery
35
left cardiac atrium
35
islet of Langerhans
3
dorsal plus ventral thalamus
1
+ See 1 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
Panc1
1
See all biosamples
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