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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
47
WGBS
32
ChIP-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
Assay category
Transcription
69
DNA accessibility
53
DNA methylation
32
DNA binding
8
3D chromatin structure
Target of assay
30
control
5
histone
5
histone modification
4
broad histone mark
3
nucleotide modification
1
narrow histone mark
Date released
80
May, 2022
17
May, 2021
12
August, 2017
11
October, 2019
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
August, 2021
3
December, 2017
3
March, 2020
3
November, 2019
3
October, 2022
3
September, 2020
2
June, 2019
2
November, 2017
1
February, 2023
1
May, 2019
Available data
166
bam
150
bigWig
bed narrowPeak
105
fastq
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
7
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
170
Homo sapiens
Biosample type
137
primary cell
30
cell line
4
in vitro differentiated cells
Organ
253
pancreas
171
epithelium
155
liver
127
connective tissue
76
adipose tissue
59
brain
44
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
99
HPAP
72
AMP
Genome assembly (visualization)
20
hg19
10
GRCh38
Lab
99
Klaus Kaestner, Upenn
66
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
34
inconsistent ontology term
4
audit script error
assay_slims!
Transcription
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
171 results
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ATAC-seq
WGBS
ChIP-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
31
6
1
pancreatic beta cell
16
16
6
1
endothelial cell of umbilical vein
7
2
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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cell line
EndoC_BH1
18
2
1
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
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