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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
3
ATAC-seq
2
pCHi-C
Assay category
218
DNA binding
35
DNA accessibility
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
229
bam
205
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
255
Homo sapiens
Biosample type
241
tissue
14
primary cell
Organ
593
liver
461
pancreas
314
epithelium
255
brain
222
kidney
213
heart
198
connective tissue
162
vasculature
157
blood vessel
110
limb
87
adipose tissue
82
artery
79
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
204
GRCh38
146
hg19
Lab
255
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
assay_title!
RNA microarray
files.file_type!
bed bedMethyl
month_released!
July, 2019
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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