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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
44
ATAC-seq
9
DNase-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
54
DNA accessibility
49
DNA binding
3
3D chromatin structure
Target of assay
34
histone
34
histone modification
23
broad histone mark
11
narrow histone mark
10
control
5
transcription factor
1
RNA binding protein
Date released
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
July, 2019
5
June, 2019
3
March, 2020
3
November, 2017
Available data
88
bed narrowPeak
68
bam
48
bigWig
40
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
1
tsv
Organism
107
Homo sapiens
Biosample type
66
tissue
27
primary cell
14
cell line
Organ
595
liver
463
pancreas
309
epithelium
227
brain
217
kidney
200
connective tissue
192
heart
112
vasculature
107
blood vessel
103
limb
89
adipose tissue
77
artery
74
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
87
GRCh38
58
hg19
Lab
107
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
assay_title!
RNA microarray
month_released!
July, 2019
May, 2019
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
35
2
tibial artery
23
1
2
aorta
1
1
ascending aorta
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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