Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
129
ATAC-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
RRBS
7
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
217
DNA accessibility
209
DNA binding
7
3D chromatin structure
1
DNA methylation
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
20
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
100
May, 2020
55
June, 2019
32
October, 2019
29
February, 2021
21
May, 2022
17
August, 2017
12
February, 2023
9
November, 2017
8
January, 2021
5
May, 2019
4
August, 2021
4
July, 2019
2
November, 2020
1
March, 2020
1
March, 2023
Available data
269
bigWig
265
bam
227
bed narrowPeak
100
tagAlign
87
bigBed narrowPeak
52
fastq
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
21
zippedFastqFolder
12
tsv
4
hdf5
3
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
451
Homo sapiens
Biosample type
1327
tissue
488
cell line
451
primary cell
246
in vitro differentiated cells
8
stem cell
Organ
237
epithelium
pancreas
34
vasculature
29
blood vessel
27
kidney
23
connective tissue
22
vein
17
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
4
eye
1
bone element
1
bone marrow
Project
294
AMP
108
T1D
48
HPAP
1
ITG
Genome assembly (visualization)
281
hg19
194
GRCh38
Lab
261
AMP-T2D consortium
141
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
RRBS
files.file_type!
bed bedgraph
organ_slims!
pancreas
BIOSAMPLE
ASSAY
451 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 66 more…
See all biosamples
Download