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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
495
ChIP-seq
24
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
495
DNA binding
Transcription
25
DNA accessibility
5
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
90
histone modification
89
histone
82
recombinant protein
55
narrow histone mark
54
RNA binding protein
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
63
December, 2017
53
August, 2017
51
May, 2020
50
November, 2018
26
August, 2021
20
May, 2022
8
October, 2019
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
Available data
520
bam
461
bigWig
459
fastq
442
bed narrowPeak
358
bigBed narrowPeak
87
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
535
Homo sapiens
Biosample type
329
cell line
185
tissue
15
in vitro differentiated cells
6
primary cell
Organ
533
liver
444
pancreas
295
epithelium
213
brain
195
heart
192
connective tissue
151
vasculature
150
blood vessel
147
kidney
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
37
eye
36
musculature of body
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
535
AMP
Genome assembly (visualization)
399
hg19
321
GRCh38
Lab
493
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
assay_title!
RRBS
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
535 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
STARR-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
320
1
1
2
2
2
1
tissue
liver
145
20
3
1
1
right lobe of liver
10
1
1
1
islet of Langerhans
1
pituitary gland
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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