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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
246
DNA binding
Transcription
10
DNA accessibility
3
DNA methylation
Target of assay
167
histone modification
166
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
404
November, 2017
283
October, 2019
259
August, 2017
217
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
138
August, 2021
120
May, 2019
110
February, 2023
94
December, 2017
83
November, 2018
80
April, 2019
51
October, 2018
48
March, 2020
46
September, 2018
40
May, 2024
40
November, 2019
35
December, 2018
28
July, 2019
25
January, 2019
24
February, 2018
22
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2022
1
March, 2023
Available data
176
bam
176
fastq
166
bigWig
139
bed narrowPeak
77
tagAlign
40
bed broadPeak
40
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
Organism
252
Homo sapiens
Biosample type
133
tissue
68
in vitro differentiated cells
58
primary cell
Organ
125
connective tissue
99
pancreas
adipose tissue
53
liver
29
epithelium
22
musculature of body
Project
259
AMP
Genome assembly (visualization)
168
hg19
144
GRCh38
Lab
259
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
RRBS
organ_slims!
adipose tissue
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
liver
48
3
islet of Langerhans
42
1
1
skeletal muscle tissue
22
pancreas
14
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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