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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
27
ChIP-seq
4
DNase-seq
4
pCHi-C
1
GRO-seq
RRBS
Assay category
Transcription
32
DNA accessibility
27
DNA binding
Target of assay
15
histone
15
histone modification
11
narrow histone mark
8
control
4
broad histone mark
4
transcription factor
1
RNA binding protein
Date released
27
February, 2023
13
December, 2017
9
February, 2018
7
June, 2019
7
October, 2019
1
January, 2018
Available data
47
bed narrowPeak
29
bam
23
fastq
21
bigWig
7
bed bed3+
6
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
37
tissue
23
in vitro differentiated cells
4
primary cell
Organ
596
liver
465
pancreas
317
epithelium
260
brain
225
heart
225
kidney
202
connective tissue
168
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
83
artery
82
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
48
hg19
21
GRCh38
1
hg18
Lab
64
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
assay_title!
RRBS
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
DNase-seq
pCHi-C
GRO-seq
tissue
retina
15
3
pigmented layer of retina
12
islet of Langerhans
1
2
4
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
primary cell
retinal pigment epithelial cell
3
1
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