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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
95
ChIP-seq
26
snATAC-seq
10
MeRIP-seq
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
pCHi-C
1
whole genome sequencing assay
Assay category
Transcription
165
DNA accessibility
95
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
31
broad histone mark
28
transcription factor
27
narrow histone mark
14
control
11
RNA binding protein
5
nucleotide modification
Date released
96
August, 2021
43
May, 2021
40
May, 2024
38
May, 2022
21
February, 2023
11
May, 2023
10
April, 2020
10
November, 2020
8
January, 2021
5
March, 2019
1
October, 2017
Available data
160
bed narrowPeak
85
bigWig
64
xls
20
fastq
19
bam
3
bed bedgraph
3
hic
3
txt
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
1
bedpe
1
vcf
Organism
282
Homo sapiens
Biosample type
primary cell
203
tissue
49
in vitro differentiated cells
31
cell line
Organ
82
kidney
56
pancreas
40
heart
40
liver
10
lung
6
epithelium
4
connective tissue
1
thymus
Project
246
AMP
27
T1D
10
LungMap
Genome assembly (visualization)
118
GRCh38
70
hg19
Lab
AMP-T2D consortium
87
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_slims!
Transcription
assay_title!
STARR-seq
biosample_type!
primary cell
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
283 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
pCHi-C
whole genome sequencing assay
tissue
kidney
75
6
1
islet of Langerhans
34
6
4
2
left cardiac atrium
40
liver
20
lung
10
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
6
37
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
18
1
1
EndoC_BH1
6
3
2
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