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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
161
DNase-seq
41
ATAC-seq
4
FAIRE-seq
Assay category
Transcription
524
DNA binding
206
DNA accessibility
Target of assay
436
histone modification
435
histone
237
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
152
October, 2019
147
June, 2019
93
May, 2019
87
August, 2017
65
April, 2019
45
October, 2018
36
December, 2017
27
May, 2020
20
May, 2022
17
November, 2018
13
October, 2017
7
July, 2019
6
January, 2019
6
November, 2017
4
March, 2020
3
December, 2018
2
January, 2018
Available data
777
bed narrowPeak
731
bam
730
bigWig
493
bigBed narrowPeak
197
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
tsv
1
txt
Organism
724
Homo sapiens
Biosample type
730
tissue
413
cell line
342
primary cell
127
in vitro differentiated cells
2
stem cell
Organ
130
brain
113
liver
96
heart
96
pancreas
88
kidney
86
limb
65
blood vessel
65
vasculature
52
musculature of body
27
artery
27
nerve
25
adipose tissue
25
connective tissue
18
ureter
14
spleen
3
eye
1
pituitary gland
Project
728
AMP
2
T1D
Genome assembly (visualization)
779
GRCh38
730
hg19
Lab
709
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
WGBS
BIOSAMPLE
ASSAY
730 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
82
2
20
heart left ventricle
29
3
2
islet of Langerhans
29
1
3
1
kidney
20
13
1
body of pancreas
26
2
4
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