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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
134
DNA binding
77
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
6
July, 2019
6
October, 2019
5
March, 2020
Available data
191
bed narrowPeak
148
bigWig
135
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
219
Homo sapiens
Biosample type
196
tissue
14
cell line
9
primary cell
Organ
593
liver
412
pancreas
271
epithelium
262
brain
kidney
219
heart
197
connective tissue
166
vasculature
160
blood vessel
114
limb
97
bone element
85
musculature of body
84
adipose tissue
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
23
embryo
23
spleen
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
219
AMP
Genome assembly (visualization)
190
GRCh38
118
hg19
Lab
179
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
assay_title!
WGBS
audit.ERROR.category!
audit script error
organ_slims!
kidney
BIOSAMPLE
ASSAY
219 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
RRBS
tissue
coronary artery
5
36
2
heart left ventricle
35
2
3
1
1
1
left cardiac atrium
40
1
heart
14
18
1
heart right ventricle
13
1
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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