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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
906
ChIP-seq
196
ATAC-seq
178
DNase-seq
86
RNA microarray
WGBS
25
pCHi-C
22
snATAC-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
906
DNA binding
400
DNA accessibility
14
3D chromatin structure
11
DNA methylation
Target of assay
627
histone modification
626
histone
324
narrow histone mark
302
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
185
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
23
October, 2017
21
November, 2019
20
November, 2018
18
July, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
966
bam
919
bed narrowPeak
838
bigWig
560
bigBed narrowPeak
263
fastq
237
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
26
tsv
10
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1442
Homo sapiens
Biosample type
1449
tissue
599
primary cell
518
cell line
221
in vitro differentiated cells
8
stem cell
Organ
244
brain
208
pancreas
196
heart
183
liver
118
blood vessel
118
vasculature
114
limb
113
kidney
96
bone element
83
connective tissue
82
adipose tissue
74
musculature of body
69
artery
38
nerve
37
eye
23
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1415
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
860
GRCh38
835
hg19
Lab
1318
AMP-T2D consortium
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
11
Katalin Susztak, Upenn
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_slims!
Transcription
assay_title!
WGBS
audit.WARNING.category!
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
1449 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
1
1
1
islet of Langerhans
71
68
1
4
7
2
1
1
4
bone element
84
kidney
27
11
13
1
1
body of pancreas
35
4
4
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