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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
5
ATAC-seq
4
DNase-seq
WGBS
1
FAIRE-seq
Assay category
171
DNA binding
Transcription
10
DNA accessibility
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
334
November, 2017
210
June, 2019
191
October, 2019
181
August, 2017
128
May, 2021
97
May, 2019
73
November, 2018
72
December, 2017
72
May, 2020
65
April, 2019
46
September, 2018
45
October, 2018
40
May, 2024
32
August, 2021
30
December, 2018
21
January, 2019
20
May, 2022
16
February, 2018
14
October, 2017
12
July, 2019
11
November, 2019
8
January, 2018
7
August, 2020
7
March, 2020
6
February, 2021
5
September, 2017
3
February, 2023
3
September, 2020
1
November, 2020
Available data
194
fastq
191
bam
181
bigWig
142
bed narrowPeak
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
175
Homo sapiens
Biosample type
87
tissue
48
in vitro differentiated cells
46
primary cell
Organ
70
pancreas
63
connective tissue
18
liver
17
epithelium
15
adipose tissue
13
musculature of body
Project
181
AMP
Genome assembly (visualization)
181
hg19
156
GRCh38
Lab
181
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
WGBS
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
27
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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