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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
Transcription
288
DNA accessibility
282
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
239
histone
239
histone modification
123
broad histone mark
116
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
135
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
34
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
December, 2017
3
October, 2022
3
September, 2020
2
November, 2020
1
January, 2018
1
March, 2020
1
March, 2023
Available data
362
bigWig
359
bam
297
bed narrowPeak
165
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
639
Homo sapiens
Biosample type
1410
tissue
635
primary cell
541
cell line
251
in vitro differentiated cells
4
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
22
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
Project
399
AMP
147
HPAP
92
T1D
1
ITG
Genome assembly (visualization)
376
hg19
287
GRCh38
1
hg18
Lab
366
AMP-T2D consortium
147
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
pCHi-C
organ_slims!
limb
BIOSAMPLE
ASSAY
639 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
15
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
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stem cell
hESC
3
1
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