Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
78
ATAC-seq
5
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
Transcription
224
DNA binding
84
DNA accessibility
4
3D chromatin structure
Target of assay
211
histone
211
histone modification
110
broad histone mark
101
narrow histone mark
7
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
117
May, 2021
June, 2019
46
August, 2017
46
September, 2018
45
May, 2020
21
October, 2019
9
November, 2017
7
August, 2020
5
September, 2017
4
July, 2019
4
May, 2019
3
August, 2021
3
September, 2020
1
February, 2021
1
November, 2020
Available data
312
bigWig
301
bam
248
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
18
tsv
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
312
Homo sapiens
Biosample type
692
tissue
418
cell line
312
primary cell
132
in vitro differentiated cells
3
stem cell
Organ
103
epithelium
90
pancreas
23
vasculature
20
blood vessel
15
vein
12
brain
10
kidney
4
liver
3
connective tissue
Project
218
AMP
84
T1D
10
HPAP
Genome assembly (visualization)
302
hg19
220
GRCh38
Lab
185
AMP-T2D consortium
117
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
pCHi-C
month_released!
June, 2019
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
monocyte
84
2
CD8-positive, alpha-beta T cell
33
2
pancreatic endocrine cell
23
pancreatic alpha cell
7
13
pancreatic beta cell
7
10
+ See 36 more…
See all biosamples
Download