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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
70
ChIP-seq
47
WGBS
3
Hi-C
Assay category
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
46
September, 2018
41
August, 2017
7
August, 2020
6
February, 2021
5
September, 2017
3
October, 2022
3
September, 2020
Available data
108
fastq
92
bam
90
bigWig
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
191
Homo sapiens
Biosample type
213
tissue
191
primary cell
59
cell line
3
in vitro differentiated cells
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
22
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
Project
99
HPAP
92
AMP
Genome assembly (visualization)
90
GRCh38
83
hg19
Lab
99
Klaus Kaestner, Upenn
92
AMP-T2D consortium
Audit category:
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
assay_title!
pCHi-C
organ_slims!
lymph node
BIOSAMPLE
ASSAY
191 results
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ATAC-seq
ChIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
35
13
31
1
pancreatic beta cell
23
13
16
1
pancreatic endocrine cell
23
pancreatic acinar cell
9
8
1
pancreatic ductal cell
4
13
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