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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
825
ChIP-seq
260
ATAC-seq
178
DNase-seq
85
RNA microarray
28
snATAC-seq
27
WGBS
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
825
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
558
histone modification
557
histone
296
narrow histone mark
261
broad histone mark
175
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
216
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
39
May, 2022
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
March, 2020
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
December, 2019
2
January, 2018
1
August, 2022
Available data
926
bed narrowPeak
915
bam
798
bigWig
504
bigBed narrowPeak
274
fastq
207
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
172
tagAlign
85
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
4
tsv
1
bedpe
1
tagAlign bed3+
Organism
1432
Homo sapiens
Biosample type
1441
tissue
626
primary cell
251
in vitro differentiated cells
226
cell line
4
stem cell
Organ
213
pancreas
201
heart
186
liver
182
kidney
160
brain
119
blood vessel
119
vasculature
115
limb
96
bone element
89
connective tissue
88
adipose tissue
74
musculature of body
69
artery
38
nerve
33
eye
24
spleen
18
ureter
12
epithelium
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
1408
AMP
23
T1D
10
LungMap
Genome assembly (visualization)
884
GRCh38
831
hg19
Lab
1239
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
pCHi-C
month_released!
December, 2019
November, 2017
BIOSAMPLE
ASSAY
1441 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
islet of Langerhans
71
68
1
7
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
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