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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
150
DNA accessibility
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
73
August, 2021
68
June, 2019
23
April, 2019
14
October, 2019
11
May, 2023
3
February, 2021
2
July, 2019
1
December, 2019
Available data
160
bed narrowPeak
106
bam
96
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
195
Homo sapiens
Biosample type
183
tissue
12
cell line
Organ
595
liver
466
pancreas
epithelium
260
brain
227
kidney
224
heart
198
connective tissue
vasculature
162
blood vessel
115
limb
96
bone element
88
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
38
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
195
AMP
Genome assembly (visualization)
170
GRCh38
97
hg19
Lab
111
AMP-T2D consortium
82
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
assay_title!
pCHi-C
organ_slims!
epithelium
vasculature
BIOSAMPLE
ASSAY
195 results
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ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
FAIRE-seq
Hi-C
RNA microarray
RRBS
tissue
kidney
75
13
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
HEK293T
2
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