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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
50
May, 2020
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
June, 2019
1
December, 2018
1
February, 2021
1
March, 2020
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
595
Homo sapiens
Biosample type
385
cell line
186
tissue
15
in vitro differentiated cells
9
primary cell
Organ
595
liver
466
pancreas
323
epithelium
260
brain
227
kidney
224
heart
198
connective tissue
168
vasculature
162
blood vessel
115
limb
96
bone element
88
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
38
eye
38
nerve
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
595
AMP
Genome assembly (visualization)
462
hg19
369
GRCh38
Lab
553
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
assay_title!
pCHi-C
organ_slims!
spleen
BIOSAMPLE
ASSAY
595 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
1
tissue
liver
145
20
2
3
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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