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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
Transcription
80
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
242
October, 2019
216
May, 2021
200
June, 2019
197
August, 2017
151
May, 2020
146
February, 2021
140
May, 2022
134
August, 2021
120
May, 2019
101
February, 2023
94
December, 2017
86
November, 2018
80
April, 2019
51
October, 2018
47
March, 2020
46
September, 2018
41
July, 2019
40
May, 2024
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2022
1
March, 2023
Available data
104
bed narrowPeak
64
xls
34
bam
30
bigWig
24
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
134
Homo sapiens
Biosample type
72
tissue
31
in vitro differentiated cells
27
cell line
4
primary cell
Organ
73
kidney
26
liver
6
epithelium
connective tissue
3
pancreas
1
adipose tissue
Project
134
AMP
Genome assembly (visualization)
90
GRCh38
41
hg19
Lab
71
Katalin Susztak, Upenn
37
AMP-T2D consortium
26
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
assay_title!
shRNA RNA-seq
organ_slims!
connective tissue
nerve
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
in vitro differentiated cells
neural progenitor cell
10
21
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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