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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
84
RNA microarray
32
DNase-seq
16
ATAC-seq
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
218
DNA binding
Transcription
49
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
92
February, 2021
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
5
February, 2023
4
July, 2019
2
March, 2020
2
November, 2018
1
May, 2021
Available data
239
bam
211
bed narrowPeak
210
bigWig
127
bigBed narrowPeak
118
tagAlign
84
txt
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
tagAlign bed3+
Organism
356
Homo sapiens
Biosample type
340
tissue
16
primary cell
Organ
597
liver
466
pancreas
321
epithelium
259
brain
229
kidney
227
heart
202
connective tissue
167
vasculature
161
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
355
AMP
1
T1D
Genome assembly (visualization)
213
GRCh38
161
hg19
Lab
355
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
assay_title!
single cell RNA-seq
files.file_type!
hdf5
BIOSAMPLE
ASSAY
356 results
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ChIP-seq
RNA microarray
DNase-seq
ATAC-seq
pCHi-C
RRBS
FAIRE-seq
tissue
bone element
84
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
+ See 86 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 1 more…
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