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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
ChIP-seq
24
ATAC-seq
8
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
587
DNA binding
Transcription
32
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
127
histone modification
126
histone
119
control
82
recombinant protein
68
narrow histone mark
58
RNA binding protein
58
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
54
August, 2017
53
November, 2018
51
May, 2020
44
October, 2019
26
August, 2021
20
May, 2022
3
July, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
Available data
557
bam
487
bigWig
468
bed narrowPeak
460
fastq
384
bigBed narrowPeak
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
vcf
Organism
637
Homo sapiens
Biosample type
387
cell line
226
tissue
15
in vitro differentiated cells
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
637
AMP
Genome assembly (visualization)
490
hg19
396
GRCh38
Lab
595
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
637 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
whole genome sequencing assay
cell line
HepG2
378
1
1
2
2
2
1
tissue
liver
145
20
2
3
1
1
1
tibial nerve
35
1
2
right lobe of liver
10
1
2
1
esophagus
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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