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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
6
WGBS
4
Hi-C
Assay category
Transcription
12
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
12
February, 2023
6
February, 2021
4
July, 2019
Available data
359
bigWig
357
bam
295
bed narrowPeak
134
fastq
109
bigBed narrowPeak
100
tagAlign
80
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
22
Homo sapiens
Biosample type
26
tissue
22
primary cell
7
cell line
4
stem cell
2
in vitro differentiated cells
Organ
8
epithelium
6
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
16
AMP
6
HPAP
Genome assembly (visualization)
4
hg19
Lab
16
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
6
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
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