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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
85
RNA microarray
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
907
DNA binding
442
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
79
February, 2023
74
October, 2018
67
August, 2021
50
May, 2020
48
December, 2017
40
May, 2024
38
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
December, 2019
2
January, 2018
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
84
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
24
tsv
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1512
Homo sapiens
Biosample type
1520
tissue
596
primary cell
547
cell line
249
in vitro differentiated cells
8
stem cell
Organ
244
brain
204
heart
203
pancreas
187
liver
176
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
90
connective tissue
89
adipose tissue
74
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
12
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1506
AMP
14
T1D
Genome assembly (visualization)
941
GRCh38
836
hg19
Lab
1343
AMP-T2D consortium
76
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
snATAC-seq
lab.title!
Struan F.A. Grant, CHOP
month_released!
December, 2019
BIOSAMPLE
ASSAY
1520 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
4
3
1
1
4
kidney
27
75
13
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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