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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
40
ATAC-seq
11
DNase-seq
11
WGBS
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
763
DNA binding
Transcription
53
DNA accessibility
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
140
August, 2017
94
December, 2017
87
November, 2018
58
October, 2018
35
December, 2018
25
January, 2019
24
February, 2018
18
May, 2022
17
October, 2017
10
February, 2023
6
September, 2017
5
January, 2018
1
August, 2018
1
February, 2021
1
March, 2019
Available data
1629
bam
1522
bed narrowPeak
1408
bigWig
933
bigBed narrowPeak
826
fastq
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
89
txt
64
xls
35
tsv
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
830
Homo sapiens
Biosample type
423
cell line
279
tissue
primary cell
131
in vitro differentiated cells
4
stem cell
Organ
461
liver
110
pancreas
103
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
spleen
23
embryo
19
epithelium
13
brain
4
bone element
4
skeleton
2
musculature of body
Project
837
AMP
Genome assembly (visualization)
676
hg19
606
GRCh38
5
hg18
Lab
817
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
1
inconsistent replicate
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
assay_title!
snDrop-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
837 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2
360
1
1
1
GM12878
60
tissue
liver
67
2
1
1
islet of Langerhans
28
20
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 12 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
1
hepatocyte
15
definitive endodermal cell
8
1
primitive gut cell
8
1
+ See 7 more…
stem cell
hESC
3
1
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