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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
257
ATAC-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
530
DNA binding
286
DNA accessibility
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
173
August, 2017
173
October, 2019
95
February, 2021
81
February, 2023
73
August, 2021
50
May, 2020
40
May, 2024
39
May, 2022
31
March, 2020
29
October, 2018
28
July, 2019
25
November, 2017
22
May, 2019
21
November, 2019
17
October, 2017
16
April, 2019
12
December, 2017
11
May, 2023
10
April, 2020
9
November, 2018
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
986
Homo sapiens
Biosample type
989
tissue
543
primary cell
239
in vitro differentiated cells
192
cell line
8
stem cell
Organ
152
pancreas
138
liver
128
brain
116
heart
97
kidney
96
bone element
80
connective tissue
79
adipose tissue
58
blood vessel
58
vasculature
44
artery
37
musculature of body
34
eye
31
limb
13
epithelium
12
nerve
12
skeleton
12
spleen
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
955
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
386
GRCh38
344
hg19
Lab
786
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
assay_slims!
Transcription
assay_title!
total RNA-seq
files.file_type!
bigBed narrowPeak
csv
BIOSAMPLE
ASSAY
989 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
71
68
7
4
3
1
4
liver
107
20
3
1
1
1
kidney
9
75
6
1
1
bone element
84
left cardiac atrium
40
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