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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
669
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
669
DNA binding
470
DNA accessibility
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
442
histone modification
441
histone
227
broad histone mark
214
narrow histone mark
135
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
171
October, 2019
163
June, 2019
136
August, 2017
115
May, 2019
95
February, 2021
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
48
December, 2017
40
May, 2024
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
21
November, 2019
16
November, 2017
11
May, 2023
10
April, 2020
9
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
984
bam
984
bed narrowPeak
855
bigWig
561
bigBed narrowPeak
274
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1310
Homo sapiens
Biosample type
1312
tissue
552
primary cell
527
cell line
216
in vitro differentiated cells
8
stem cell
Organ
204
heart
198
pancreas
184
kidney
126
brain
120
blood vessel
120
vasculature
117
liver
115
limb
96
bone element
82
connective tissue
81
adipose tissue
69
artery
60
musculature of body
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1278
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
825
GRCh38
732
hg19
Lab
1109
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
Transcription
assay_title!
total RNA-seq
files.file_type!
csv
tagAlign
BIOSAMPLE
ASSAY
1312 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
62
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
liver
75
20
2
3
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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