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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
16
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
40
DNA binding
13
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
61
May, 2021
8
January, 2021
5
February, 2023
Available data
122
bigWig
bed narrowPeak
84
bam
84
tagAlign
Organism
74
Homo sapiens
Biosample type
42
in vitro differentiated cells
27
primary cell
tissue
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
45
AMP
29
T1D
Genome assembly (visualization)
8
hg19
Lab
388
AMP-T2D consortium
147
Klaus Kaestner, Upenn
74
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
biosample_type!
tissue
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
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